Hello,
I have used BWS before to install mods for the BGT (using the original BG and BG2) plus for BG2EE. Today was my first attempt at using BWS to install mods for a BGEE/BG2EE Trilogy setup. I used the "Recommended" mod selection, with twelve additional, minor items selected. It mostly went well, except for two minor errors.
1. When downloading the selected mods, BWS was not able to find EEKeeper. That was okay, though, since I already have a copy of that program.
2. Also, towards the very beginning of the BWS mod install process, a message popped up saying that BWS could not locate a certain file on my computer (sorry, I forgot to write down the file name), so it believed that ToB was not installed, and BWS was therefore skipping the installation of Ascension v1.4. In reality, BG2EE ToB is in fact installed on my computer, and I had previously started ToB, created a character, then saved the game, etc. Not having the Ascension mod installed is okay with me, but I wanted to report the error here, as it appears to be a popular mod that others would likely be unhappy to skip.
Please let me know if you need me to upload any files here to help with troubleshooting.
Thanks..