Also i think it's easier on the users, knowing we can get the fixes but only worry about installing one mod. Thats one thing i like about CA, i get the "whole new world" feel, all new npc's and so on, without having to install a couple dozen different mods and worrying about compatibilities, install order and so on.
So whichever way is the easiest on you and anyone else working on CA seems like the best option to me.
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